Abra segmentum
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Sample collected
Sample acquired
Data generation
In assembly
Submitted
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- Scientific name accepted: Abra segmentum
- Authority: (Récluz, 1843)
- Phylum: Mollusca
- Genus: Abra
- Species: Abra segmentum
- Ploidy: Unknown
- Common name: No common name known
- Collect event: ST-Banyuls
- Coordinator(s): Unknown
- Operator(s): Stéphane Hourdez
- Taxonomist(s): Stéphane Hourdez
- Date: Oct. 12, 2023
- Site (sea): Mediterranean Sea
- Site (region): Lagune de Canet-Saint Nazaire
- Latitude: 42.66282
- Longitude: 3.02978
- ToLID prefix: xbAbrSegm
- Abra segmentum archive: pending
- Genome data portal
- GoaT
- WoRMS
- NCBI
- GBIF (pending)
- OBIS
- INPN (pending)
- OpenObs (pending)
- ENA BioProject of the sequencing raw data: PRJEB88404
- ENA BioProject of the genome assembly: PRJEB88405
- Assembly accession: GCA_965244925
- EAR report with genome assembly metrics: PDF
- Assembly ploidy: Not communicated
- Sequencing: Not communicated
- Size: 1.7 Gbp
- GC content: 36.89%
- Number of chromosomes: 19
- Number of scaffolds: 1047
- N50 of scaffolds: 81.86 Mbp
- L50 of scaffolds: 9
- Number of contigs: 1280
- N50 of contigs: 10.65 Mbp
- L50 of contigs: 48
- Protein-coding genes: Undetermined
- Gene length (average): Undetermined
- Gene length (median): Undetermined
- CDS length (average): Undetermined
- CDS length (median): Undetermined
- CDS proportion (genome): Undetermined
- Genes without introns: Undetermined
- Number of contigs with at least one gene (genome): Undetermined
- Number of contigs with at least one gene (bases): Undetermined
BUSCO structural annotations completeness
BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)
Genome
- Single-copy genes: 96.1%
- Duplicated genes: 0.8%
- Fragmented genes: 1.6%
- Missing genes: 1.6%
Proteins
- Single-copy genes: Undetermined
- Duplicated genes: Undetermined
- Fragmented genes: Undetermined
- Missing genes: Undetermined