Acanthocardia deshayesii

goat
bioproject_species
Genome portal
Access to genome browser and other tools for the genome - Pending
Resampling required
Sample collected
Sample acquired
Data generation
In assembly
Submitted
Insdc open
  • Scientific name accepted: Acanthocardia deshayesii
  • Authority: (Payraudeau, 1826)
  • Phylum: Mollusca
  • Genus: Acanthocardia
  • Ploidy: Unknown
  • Common name: No common name known
© By ATLASea photography team. License CC-BY-NC-SA-4.0
PhyloPic color code: Species match Genus match Family and above match
  • Collect event: MI-DIVESEA_ENDOUME
  • Coordinator(s): Line Le Gall
  • Operator(s): JAMET Lise, SERUZIER Élisa, STEPHAN Emmy
  • Taxonomist(s): Gilles Devauchelle
  • Date: June 19, 2025
  • Site (sea): Mediterranean Sea
  • Site (region): Cap Cavau | Au large Sud
  • Latitude: 43.2379166667 / 43°14'16.5"N
  • Longitude: 5.2497083333 / 5°14'58.9"E
  • MNHN collection

No occurrence data available from GBIF

  • ToLID prefix: xbAcaDesh
  • Genome data portal (pending)
  • GoaT
  • WoRMS
  • NCBI
  • GBIF (pending)
  • OBIS
  • INPN (pending)
  • OpenObs (pending)
  • ENA BioProject of the sequencing raw data: PRJEB123575
  • ENA BioProject of the genome assembly: PRJEB123576
  • Assembly accession: GCA_987433275
  • EAR report with genome assembly metrics: PDF
  • Size: 1.39 Gbp
  • GC content: 37.44%
  • Number of chromosomes: 19
  • Number of scaffolds: 93
  • N50 of scaffolds: 75.91 Mbp
  • L50 of scaffolds: 8
  • Number of contigs: 227
  • N50 of contigs: 16.87 Mbp
  • L50 of contigs: 24
  • Protein-coding genes: Undetermined
  • Gene length (average): Undetermined
  • Gene length (median): Undetermined
  • CDS length (average): Undetermined
  • CDS length (median): Undetermined
  • CDS proportion (genome): Undetermined
  • Genes without introns: Undetermined
  • Number of contigs with at least one gene (genome): Undetermined
  • Number of contigs with at least one gene (bases): Undetermined

BUSCO structural annotations completeness

BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)

Genome

  • Single-copy genes: 97.7%
  • Duplicated genes: 0.8%
  • Fragmented genes: 0.8%
  • Missing genes: 0.8%

Proteins

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined