Actinopyga flammea

goat
bioproject_species
Genome portal
Access to genome browser and other tools for the genome - Pending
Resampling required
Sample collected
Sample acquired
Data generation
In assembly
Submitted
Insdc open
  • Scientific name accepted: Actinopyga flammea
  • Authority: Cherbonnier, 1979
  • Phylum: Echinodermata
  • Genus: Actinopyga
  • Ploidy: Unknown
© By ATLASea photography team. License CC-BY-NC-SA-4.0
PhyloPic color code: Species match Genus match Family and above match
  • Collect event: MI-KANAMECO 2024
  • Coordinator(s): PUILLANDRE Nicolas | SARAH Samadi
  • Operator(s): Unknown
  • Taxonomist(s): CONAND Chantal | HOURDEZ Stéphane
  • Date: March 15, 2024
  • Site (sea): Pacific Ocean
  • Site (region): Province Sud | Îlot Amédée | Grand Récif Aboré | Réserve naturelle
  • Latitude: 22.39268 / 22°23'33.6"S
  • Longitude: 166.28253 / 166°16'57.1"E
  • MNHN collection

No occurrence data available from GBIF

  • ToLID prefix: ehActFlam
  • Genome data portal (pending)
  • GoaT
  • WoRMS
  • NCBI
  • GBIF (pending)
  • OBIS
  • INPN (pending)
  • OpenObs (pending)
  • ENA BioProject of the sequencing raw data: PRJEB98895
  • ENA BioProject of the genome assembly: PRJEB98896
  • Assembly accession: GCA_978019465
  • EAR report with genome assembly metrics: pending
  • Size: 1.46 Gbp
  • GC content: 40.5%
  • Number of chromosomes: 24
  • Number of scaffolds: 515
  • N50 of scaffolds: 60.46 Mbp
  • L50 of scaffolds: 11
  • Number of contigs: 798
  • N50 of contigs: 12.95 Mbp
  • L50 of contigs: 33
  • Protein-coding genes: Undetermined
  • Gene length (average): Undetermined
  • Gene length (median): Undetermined
  • CDS length (average): Undetermined
  • CDS length (median): Undetermined
  • CDS proportion (genome): Undetermined
  • Genes without introns: Undetermined
  • Number of contigs with at least one gene (genome): Undetermined
  • Number of contigs with at least one gene (bases): Undetermined

BUSCO structural annotations completeness

BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)

Genome

  • Single-copy genes: 98.4%
  • Duplicated genes: 0.8%
  • Fragmented genes: 0.8%
  • Missing genes: 0.0%

Proteins

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined