Axinella polypoides

goat
bioproject_species
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Sample collected
Sample acquired
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  • Scientific name accepted: Axinella polypoides
  • Authority: (Schmidt, 1862)
  • Genus: Axinella
  • Species: Axinella polypoides
  • Sex: Unknown
  • Ploidy: diploid
  • Common name: No common name known
  • Collect event: MI-GolfeDuLion
  • Coordinator(s): LE GALL Line
  • Operator(s): HOURDEZ Stéphane, VASSARD Emmanuel, LE GALL Line, UTGE José
  • Date: Oct. 1, 2023
  • Site (sea): Mediterranean Sea
  • Site (region): La Faille
  • Latitude: 42.92024
  • Longitude: 3.06366

World occurrences from GBIF

An output of a machine observation process for example a photograph, a video, an audio recording, a remote sensing image or an occurrence record based on telemetry
An output of human observation process eg. evidence of an occurrence taken from field notes or literature or a records of an occurrence without physical evidence nor evidence captured with a machine
A material entity that represents an entity of interest in whole or in part
A reference to, or citation of, one, a part of, or multiple specimens in scholarly publications, for example, a citation of a physical specimen from a scientifci collection in taxonomic treatment in a scientific publication or an occurrence mentioned in a field note book
A specimen that has been preserved, for example, a plant on an herbarium sheet or a cataloged lot of fish in a jar
A preserved specimen that is a fossil, for example, a body fossil, a coprolite, a gastrolith, an ichnofossil or a piece of petrified tree
A specimen that is alive, for example, a living plant in a botanical garden or a living animal in a zoo
Organism at a particular place at a particular time
  • ENA BioProject of the sequencing raw data: PRJEB78914
  • ENA BioProject of the genome assembly: PRJEB78915
  • Assembly accession: GCA_964261215
  • Download EAR report with genome assembly metrics   
  • Assembly ploidy: Not communicated
  • Sequencing: Not communicated
  • Size: 137.76 Mbp
  • GC content: 44.21%
  • Number of chromosomes: 24
  • Number of scaffolds: 73
  • N50 of scaffolds: 5.43 Mbp
  • L50 of scaffolds: 10
  • Number of contigs: 444
  • N50 of contigs: 606.8 Kbp
  • L50 of contigs: 62
  • Protein-coding genes: Undetermined
  • Gene length (average): Undetermined
  • Gene length (median): Undetermined
  • CDS length (average): Undetermined
  • CDS length (median): Undetermined
  • CDS proportion (genome): Undetermined
  • Genes without introns: Undetermined
  • Number of contigs with at least one gene (genome): Undetermined
  • Number of contigs with at least one gene (bases): Undetermined

Genome (BUSCO results, with eukaryota lineage dataset)

  • Single-copy genes: 90.6%
  • Duplicated genes: 45323.0%
  • Fragmented genes: 45538.0%
  • Missing genes: 45355.0%

Proteins

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined