Donax semistriatus

goat
bioproject_species
Genome portal
Access to genome browser and other tools for the genome
Resampling required
Sample collected
Sample acquired
Data generation
In assembly
Submitted
Insdc open
  • Scientific name accepted: Donax semistriatus
  • Authority: Poli, 1795
  • Phylum: Mollusca
  • Genus: Donax
  • Species: Donax semistriatus
  • Ploidy: Unknown
  • Common name: No common name known
  • Collect event: MI-GolfeDuLion
  • Coordinator(s): Line Le Gall
  • Operator(s): LE GOFF Loïc, MANIEL Grégoire, BED'HOM Bertrand
  • Taxonomist(s): Céline Labrune
  • Date: Oct. 1, 2023
  • Site (sea): Mediterranean Sea
  • Site (region): Biquet
  • Latitude: 42.8903527778
  • Longitude: 3.0558805556

World occurrences from GBIF

An output of a machine observation process for example a photograph, a video, an audio recording, a remote sensing image or an occurrence record based on telemetry
An output of human observation process eg. evidence of an occurrence taken from field notes or literature or a records of an occurrence without physical evidence nor evidence captured with a machine
A material entity that represents an entity of interest in whole or in part
A reference to, or citation of, one, a part of, or multiple specimens in scholarly publications, for example, a citation of a physical specimen from a scientifci collection in taxonomic treatment in a scientific publication or an occurrence mentioned in a field note book
A specimen that has been preserved, for example, a plant on an herbarium sheet or a cataloged lot of fish in a jar
A preserved specimen that is a fossil, for example, a body fossil, a coprolite, a gastrolith, an ichnofossil or a piece of petrified tree
A specimen that is alive, for example, a living plant in a botanical garden or a living animal in a zoo
Organism at a particular place at a particular time
  • ENA BioProject of the sequencing raw data: PRJEB86700
  • ENA BioProject of the genome assembly: PRJEB86701
  • Assembly accession: GCA_965239255
  • EAR report with genome assembly metrics: PDF
  • Assembly ploidy: Not communicated
  • Sequencing: Not communicated
  • Size: 1.38 Gbp
  • GC content: 34.48%
  • Number of chromosomes: 19
  • Number of scaffolds: 176
  • N50 of scaffolds: 71.66 Mbp
  • L50 of scaffolds: 9
  • Number of contigs: 349
  • N50 of contigs: 17.14 Mbp
  • L50 of contigs: 24
  • Protein-coding genes: Undetermined
  • Gene length (average): Undetermined
  • Gene length (median): Undetermined
  • CDS length (average): Undetermined
  • CDS length (median): Undetermined
  • CDS proportion (genome): Undetermined
  • Genes without introns: Undetermined
  • Number of contigs with at least one gene (genome): Undetermined
  • Number of contigs with at least one gene (bases): Undetermined

BUSCO structural annotations completeness

BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)

Genome

  • Single-copy genes: 97.7%
  • Duplicated genes: 0.0%
  • Fragmented genes: 1.6%
  • Missing genes: 0.8%

Proteins

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined