Gomphonema sp. RCC431
Access to genome browser and other tools for the genome - Pending
Resampling required
Sample collected
Sample acquired
Data generation
In assembly
Submitted
Insdc open
- Scientific name accepted: Gomphonema
- Authority: C.G. Ehrenberg, 1832
- Phylum: Heterokontophyta
- Genus: Gomphonema
- Ploidy: Unknown
PhyloPic color code:
Species match
Genus match
Family and above match
- Collect event: CC-Roscoff
- Coordinator(s): Katell Hervéou
- Operator(s): Florence Le Gall
- Taxonomist(s): Florence Le Gall
- Date: April 17, 2001
- Site (sea): Atlantic Ocean
- Site (region): Roscoff Astan
- Latitude: 48.75 / 48°45'00.0"N
- Longitude: 3.95 / 3°57'00.0"W
- ENA BioProject of the sequencing raw data: PRJEB108748
- ENA BioProject of the genome assembly: PRJEB108749
- Assembly accession: GCA_988277055
- EAR report with genome assembly metrics: pending
- Size: 129.86 Mbp
- GC content: 47.0%
- Number of chromosomes: 16
- Number of scaffolds: 17
- N50 of scaffolds: 9.23 Mbp
- L50 of scaffolds: 7
- Number of contigs: 24
- N50 of contigs: 9.23 Mbp
- L50 of contigs: 7
- Protein-coding genes: Undetermined
- Gene length (average): Undetermined
- Gene length (median): Undetermined
- CDS length (average): Undetermined
- CDS length (median): Undetermined
- CDS proportion (genome): Undetermined
- Genes without introns: Undetermined
- Number of contigs with at least one gene (genome): Undetermined
- Number of contigs with at least one gene (bases): Undetermined
BUSCO structural annotations completeness
BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)
Genome
- Single-copy genes: 84.5%
- Duplicated genes: 0.0%
- Fragmented genes: 7.0%
- Missing genes: 8.5%
Proteins
- Single-copy genes: Undetermined
- Duplicated genes: Undetermined
- Fragmented genes: Undetermined
- Missing genes: Undetermined