Hexadella sp. 1

goat
bioproject_species
Genome portal
Access to genome browser and other tools for the genome - Pending
Resampling required
Sample collected
Sample acquired
Data generation
In assembly
Submitted
Insdc open
  • Scientific name accepted: Hexadella sp. 1
  • Synonym: Hexadella sp. A-XEH1ECDDD
  • Authority: Topsent, 1896
  • Phylum: Porifera
  • Genus: Hexadella
  • Species: Hexadella sp. 1
  • Ploidy: Unknown
  • Common name: No common name known
© By ATLASea photography team. License CC-BY-NC-SA-4.0
  • Collect event: MI-DIVE-SEA_DINARD
  • Coordinator(s): Line Le Gall
  • Operator(s): CHEVALDONNÉ Pierre, FEUNTEUN Éric, GUILLAUDEAU Julien, LE GALL Line, PAILLON Christelle, PÉREZ Thierry
  • Taxonomist(s): Thierry Perez
  • Date: July 3, 2024
  • Site (sea): Atlantic Ocean
  • Site (region): La Catis
  • Latitude: 48.7
  • Longitude: -2.2333333333

No occurrence data available from GBIF

  • ToLID prefix: odHexSpea
  • Hexadella sp. 1 archive: pending
  • Genome data portal (pending)
  • GoaT
  • WoRMS
  • NCBI
  • GBIF (pending)
  • OBIS
  • INPN (pending)
  • OpenObs (pending)
  • ENA BioProject of the sequencing raw data: PRJEB98390
  • ENA BioProject of the genome assembly: PRJEB98391
  • Assembly accession: GCA_977009195
  • EAR report with genome assembly metrics: PDF
  • Assembly ploidy: Not communicated
  • Sequencing: Not communicated
  • Size: 162.81 Mbp
  • GC content: 46.65%
  • Number of chromosomes: 22
  • Number of scaffolds: 29
  • N50 of scaffolds: 6.59 Mbp
  • L50 of scaffolds: 10
  • Number of contigs: 126
  • N50 of contigs: 3.92 Mbp
  • L50 of contigs: 14
  • Protein-coding genes: Undetermined
  • Gene length (average): Undetermined
  • Gene length (median): Undetermined
  • CDS length (average): Undetermined
  • CDS length (median): Undetermined
  • CDS proportion (genome): Undetermined
  • Genes without introns: Undetermined
  • Number of contigs with at least one gene (genome): Undetermined
  • Number of contigs with at least one gene (bases): Undetermined

BUSCO structural annotations completeness

BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)

Genome

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined

Proteins

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined