Kalmusia variispora

goat
bioproject_species
Genome portal
Access to genome browser and other tools for the genome - Pending
Resampling required
Sample collected
Sample acquired
Data generation
In assembly
Submitted
Insdc open
  • Scientific name accepted: Kalmusia variispora
  • Authority: (Verkley, Göker & Stielow) H.A. Ariy. & K.D. Hyde, 2014
  • Phylum: Ascomycota
  • Genus: Kalmusia
  • Ploidy: Unknown
PhyloPic color code: Species match Genus match Family and above match
  • Collect event: AMBASSADORS
  • Coordinator(s): PONCHET Jean-Michel
  • Operator(s): Unknown
  • Taxonomist(s): BOVIO Elena | NAVARRO David
  • Date: March 12, 2020
  • Site (sea): Mediterranean Sea
  • Site (region): Grotte à corail, Villefranche-sur-mer
  • Latitude: 43.69 / 43°41'24.0"N
  • Longitude: 7.31 / 7°18'36.0"E

World occurrences from GBIF

An output of a machine observation process for example a photograph, a video, an audio recording, a remote sensing image or an occurrence record based on telemetry
An output of human observation process eg. evidence of an occurrence taken from field notes or literature or a records of an occurrence without physical evidence nor evidence captured with a machine
A material entity that represents an entity of interest in whole or in part
A reference to, or citation of, one, a part of, or multiple specimens in scholarly publications, for example, a citation of a physical specimen from a scientifci collection in taxonomic treatment in a scientific publication or an occurrence mentioned in a field note book
A specimen that has been preserved, for example, a plant on an herbarium sheet or a cataloged lot of fish in a jar
A preserved specimen that is a fossil, for example, a body fossil, a coprolite, a gastrolith, an ichnofossil or a piece of petrified tree
A specimen that is alive, for example, a living plant in a botanical garden or a living animal in a zoo
Organism at a particular place at a particular time
  • ENA BioProject of the sequencing raw data: PRJEB128158
  • ENA BioProject of the genome assembly: PRJEB128159
  • Assembly accession: GCA_990062174
  • EAR report with genome assembly metrics: pending
  • Size: 40.37 Mbp
  • GC content: 51.0%
  • Number of chromosomes: 13
  • Number of scaffolds: 13
  • N50 of scaffolds: 3.31 Mbp
  • L50 of scaffolds: 6
  • Number of contigs: 16
  • N50 of contigs: 3.14 Mbp
  • L50 of contigs: 6
  • Protein-coding genes: Undetermined
  • Gene length (average): Undetermined
  • Gene length (median): Undetermined
  • CDS length (average): Undetermined
  • CDS length (median): Undetermined
  • CDS proportion (genome): Undetermined
  • Genes without introns: Undetermined
  • Number of contigs with at least one gene (genome): Undetermined
  • Number of contigs with at least one gene (bases): Undetermined

BUSCO structural annotations completeness

BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)

Genome

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined

Proteins

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined