Lima caribaea
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Sample collected
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Data generation
In assembly
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- Scientific name accepted: Lima caribaea
- Authority: A. d'Orbigny, 1853
- Phylum: Mollusca
- Genus: Lima
- Species: Lima caribaea
- Ploidy: Unknown
- Common name: No common name known
- Collect event: MI-KARUBENTHOS3
- Coordinator(s): Laure Corbari
- Operator(s): GOUILLIEUX Benoît, HOURDEZ Stéphane
- Taxonomist(s): Andy Tan
- Date: Oct. 6, 2024
- Site (sea): Atlantic Ocean
- Site (region): Grand Ilet | Pointe des Colibris
- Latitude: 15.83201
- Longitude: -61.58688
- ToLID prefix: xbLimCari
- Lima caribaea archive: pending
- Genome data portal
- GoaT
- WoRMS
- NCBI
- GBIF (pending)
- OBIS
- INPN (pending)
- OpenObs (pending)
- ENA BioProject of the sequencing raw data: PRJEB97433
- ENA BioProject of the genome assembly: PRJEB97434
- Assembly accession: GCA_977909015
- EAR report with genome assembly metrics: PDF
- Assembly ploidy: Not communicated
- Sequencing: Not communicated
- Size: 1.64 Gbp
- GC content: 37.49%
- Number of chromosomes: 20
- Number of scaffolds: 56
- N50 of scaffolds: 88.92 Mbp
- L50 of scaffolds: 8
- Number of contigs: 277
- N50 of contigs: 17.22 Mbp
- L50 of contigs: 24
- Protein-coding genes: Undetermined
- Gene length (average): Undetermined
- Gene length (median): Undetermined
- CDS length (average): Undetermined
- CDS length (median): Undetermined
- CDS proportion (genome): Undetermined
- Genes without introns: Undetermined
- Number of contigs with at least one gene (genome): Undetermined
- Number of contigs with at least one gene (bases): Undetermined
BUSCO structural annotations completeness
BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)
Genome
- Single-copy genes: 98.4%
- Duplicated genes: 0.8%
- Fragmented genes: 0.0%
- Missing genes: 0.8%
Proteins
- Single-copy genes: Undetermined
- Duplicated genes: Undetermined
- Fragmented genes: Undetermined
- Missing genes: Undetermined