Pachymatisma johnstonia

goat
bioproject_species
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Sample collected
Sample acquired
Data generation
In assembly
Submitted
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  • Scientific name accepted: Pachymatisma johnstonia
  • Authority: (Bowerbank in Johnston, 1842)
  • Phylum: Porifera
  • Genus: Pachymatisma
  • Ploidy: Unknown
© By ATLASea photography team. License CC-BY-NC-SA-4.0
PhyloPic color code: Species match Genus match Family and above match
  • Collect event: MI-DIVESEA DINARD
  • Coordinator(s): LE GALL Line
  • Operator(s): Unknown
  • Taxonomist(s): PÉREZ Thierry
  • Date: July 1, 2024
  • Site (sea): Atlantic Ocean
  • Site (region): Bec Fer
  • Latitude: 48.687317 / 48°41'14.3"N
  • Longitude: 2.0509 / 2°03'03.2"W
  • MNHN collection

World occurrences from GBIF

An output of a machine observation process for example a photograph, a video, an audio recording, a remote sensing image or an occurrence record based on telemetry
An output of human observation process eg. evidence of an occurrence taken from field notes or literature or a records of an occurrence without physical evidence nor evidence captured with a machine
A material entity that represents an entity of interest in whole or in part
A reference to, or citation of, one, a part of, or multiple specimens in scholarly publications, for example, a citation of a physical specimen from a scientifci collection in taxonomic treatment in a scientific publication or an occurrence mentioned in a field note book
A specimen that has been preserved, for example, a plant on an herbarium sheet or a cataloged lot of fish in a jar
A preserved specimen that is a fossil, for example, a body fossil, a coprolite, a gastrolith, an ichnofossil or a piece of petrified tree
A specimen that is alive, for example, a living plant in a botanical garden or a living animal in a zoo
Organism at a particular place at a particular time
  • ENA BioProject of the sequencing raw data: PRJEB90239
  • ENA BioProject of the genome assembly: PRJEB90240
  • Assembly accession: GCA_965653895
  • EAR report with genome assembly metrics: pending
  • Size: 159.96 Mbp
  • GC content: 44.0%
  • Number of chromosomes: 21
  • Number of scaffolds: 22
  • N50 of scaffolds: 8.63 Mbp
  • L50 of scaffolds: 7
  • Number of contigs: 368
  • N50 of contigs: 1.95 Mbp
  • L50 of contigs: 25
  • Protein-coding genes: Undetermined
  • Gene length (average): Undetermined
  • Gene length (median): Undetermined
  • CDS length (average): Undetermined
  • CDS length (median): Undetermined
  • CDS proportion (genome): Undetermined
  • Genes without introns: Undetermined
  • Number of contigs with at least one gene (genome): Undetermined
  • Number of contigs with at least one gene (bases): Undetermined

BUSCO structural annotations completeness

BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)

Genome

  • Single-copy genes: 93.0%
  • Duplicated genes: 0.0%
  • Fragmented genes: 2.3%
  • Missing genes: 4.7%

Proteins

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined