Pelagomonas calceolata str. RCC985
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Sample collected
Sample acquired
Data generation
In assembly
Submitted
Insdc open
- Scientific name accepted: Pelagomonas calceolata
- Synonym: Pelagomonas sp. RCC985
- Authority: R.A.Andersen & G.Saunders, 1993
- Phylum: Ochrophyta
- Genus: Pelagomonas
- Ploidy: Unknown
PhyloPic color code:
Species match
Genus match
Family and above match
- Collect event: CC-Roscoff
- Coordinator(s): Katell Hervéou
- Operator(s): Vaulot D. | Marie D.
- Taxonomist(s): Florence Le Gall
- Date: Oct. 29, 2004
- Site (sea): Pacific Ocean
- Site (region): Iles Marquises
- Latitude: 8.33 / 8°19'48.0"S
- Longitude: 141.25 / 141°15'00.0"W
- ENA BioProject of the sequencing raw data: PRJEB128197
- ENA BioProject of the genome assembly: PRJEB128198
- Assembly accession: GCA_988563955
- EAR report with genome assembly metrics: PDF
- Size: 31.47 Mbp
- GC content: 63.6%
- Number of chromosomes: 6
- Number of scaffolds: 11
- N50 of scaffolds: 5.47 Mbp
- L50 of scaffolds: 3
- Number of contigs: 24
- N50 of contigs: 5.23 Mbp
- L50 of contigs: 3
- Protein-coding genes: Undetermined
- Gene length (average): Undetermined
- Gene length (median): Undetermined
- CDS length (average): Undetermined
- CDS length (median): Undetermined
- CDS proportion (genome): Undetermined
- Genes without introns: Undetermined
- Number of contigs with at least one gene (genome): Undetermined
- Number of contigs with at least one gene (bases): Undetermined
BUSCO structural annotations completeness
BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)
Genome
- Single-copy genes: Undetermined
- Duplicated genes: Undetermined
- Fragmented genes: Undetermined
- Missing genes: Undetermined
Proteins
- Single-copy genes: Undetermined
- Duplicated genes: Undetermined
- Fragmented genes: Undetermined
- Missing genes: Undetermined