Perkinsiana rubra

goat
bioproject_species
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  • Scientific name accepted: Perkinsiana rubra
  • Authority: (Langerhans, 1880)
  • Phylum: Annelida
  • Genus: Perkinsiana
  • Species: Perkinsiana rubra
  • Ploidy: Unknown
  • Common name: No common name known
© By ATLASea photography team. License CC-BY-NC-SA-4.0
  • Collect event: MI-DIVE-SEA_DINARD
  • Coordinator(s): Line Le Gall
  • Operator(s): GOUILLIEUX Benoît, HOURDEZ Stéphane, LABRUNE Céline, ORTIZ Katia
  • Taxonomist(s): Céline Labrune | Stéphane Hourdez
  • Date: June 29, 2024
  • Site (sea): Atlantic Ocean
  • Site (region): Nerput - Au large de la plage de Longchamp
  • Latitude: 48.6517333333
  • Longitude: -2.1348333333

No occurrence data available from GBIF

  • ENA BioProject of the sequencing raw data: PRJEB89081
  • ENA BioProject of the genome assembly: PRJEB89082
  • Assembly accession: GCA_965742485
  • EAR report with genome assembly metrics: PDF
  • Assembly ploidy: Not communicated
  • Sequencing: Not communicated
  • Size: 1.49 Gbp
  • GC content: 31.92%
  • Number of chromosomes: 13
  • Number of scaffolds: 86
  • N50 of scaffolds: 114.57 Mbp
  • L50 of scaffolds: 6
  • Number of contigs: 208
  • N50 of contigs: 18.48 Mbp
  • L50 of contigs: 23
  • Protein-coding genes: Undetermined
  • Gene length (average): Undetermined
  • Gene length (median): Undetermined
  • CDS length (average): Undetermined
  • CDS length (median): Undetermined
  • CDS proportion (genome): Undetermined
  • Genes without introns: Undetermined
  • Number of contigs with at least one gene (genome): Undetermined
  • Number of contigs with at least one gene (bases): Undetermined

BUSCO structural annotations completeness

BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)

Genome

  • Single-copy genes: 93.8%
  • Duplicated genes: 1.6%
  • Fragmented genes: 0.8%
  • Missing genes: 3.9%

Proteins

  • Single-copy genes: Undetermined
  • Duplicated genes: Undetermined
  • Fragmented genes: Undetermined
  • Missing genes: Undetermined