Pyramimonas sp. RCC4209
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Sample collected
Sample acquired
Data generation
In assembly
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- Scientific name accepted: Pyramimonas
- Authority: Schmarda, 1849
- Phylum: Chlorophyta
- Genus: Pyramimonas
- Species: Pyramimonas sp. RCC4209
- Ploidy: Unknown
- Common name: No common name known
- Collect event: CC-Roscoff
- Coordinator(s): Katell Hervéou
- Operator(s): Roseline Edern
- Taxonomist(s): Roseline Edern
- Date: Oct. 16, 2013
- Site (sea): Atlantic Ocean
- Site (region): Roscoff
- Latitude: 48.72
- Longitude: -3.98
- ToLID prefix: ucPyrSpea
- Pyramimonas sp. RCC4209 archive: pending
- Genome data portal
- GoaT
- WoRMS
- NCBI
- GBIF (pending)
- OBIS
- INPN (pending)
- OpenObs (pending)
- ENA BioProject of the sequencing raw data: PRJEB107028
- ENA BioProject of the genome assembly: PRJEB107029
- Assembly accession: GCA_979252865
- EAR report with genome assembly metrics: PDF
- Assembly ploidy: Not communicated
- Sequencing: Not communicated
- Size: 132.01 Mbp
- GC content: 60.65%
- Number of chromosomes: 14
- Number of scaffolds: 20
- N50 of scaffolds: 10.53 Mbp
- L50 of scaffolds: 6
- Number of contigs: 60
- N50 of contigs: 4.01 Mbp
- L50 of contigs: 11
- Protein-coding genes: Undetermined
- Gene length (average): Undetermined
- Gene length (median): Undetermined
- CDS length (average): Undetermined
- CDS length (median): Undetermined
- CDS proportion (genome): Undetermined
- Genes without introns: Undetermined
- Number of contigs with at least one gene (genome): Undetermined
- Number of contigs with at least one gene (bases): Undetermined
BUSCO structural annotations completeness
BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)
Genome
- Single-copy genes: 92.2%
- Duplicated genes: 0.0%
- Fragmented genes: 3.1%
- Missing genes: 4.7%
Proteins
- Single-copy genes: Undetermined
- Duplicated genes: Undetermined
- Fragmented genes: Undetermined
- Missing genes: Undetermined