Ruditapes philippinarum
Access to genome browser and other tools for the genome - Pending
Resampling required
Sample collected
Sample acquired
Data generation
In assembly
Insdc open
- Scientific name accepted: Ruditapes philippinarum
- Authority: (Adams & Reeve, 1850)
- Genus: Ruditapes
- Species: Ruditapes philippinarum
- Ploidy: haploid
- Common name: No common name known
- Collect event: MI-Roscoff_Pilot
- Coordinator(s): LE GALL Line
- Operator(s): Genoscope/MNHN
- Date: March 9, 2023
- Site (sea): English channel
- Site (region): Chenal de l'ile verte
- Latitude: 48.728827
- Longitude: -3.985955
World occurrences from GBIF
An output of a machine observation process for example a photograph, a video, an audio recording, a remote sensing image or an occurrence record based on telemetry
An output of human observation process eg. evidence of an occurrence taken from field notes or literature or a records of an occurrence without physical evidence nor evidence captured with a machine
A material entity that represents an entity of interest in whole or in part
A reference to, or citation of, one, a part of, or multiple specimens in scholarly publications, for example, a citation of a physical specimen from a scientifci collection in taxonomic treatment in a scientific publication or an occurrence mentioned in a field note book
A specimen that has been preserved, for example, a plant on an herbarium sheet or a cataloged lot of fish in a jar
A preserved specimen that is a fossil, for example, a body fossil, a coprolite, a gastrolith, an ichnofossil or a piece of petrified tree
A specimen that is alive, for example, a living plant in a botanical garden or a living animal in a zoo
Organism at a particular place at a particular time
- ENA BioProject of the sequencing raw data: PRJEB81437
- ENA BioProject of the genome assembly: PRJEB81438
- Assembly accession: GCA_964294305.1
- Download EAR report with genome assembly metrics
- Assembly ploidy: haploid
- Sequencing: Not communicated
- Size: 1.3 Gbp
- GC content: 32.5%
- Number of chromosomes: 19
- Number of scaffolds: 285
- N50 of scaffolds: 71.4 Mbp
- L50 of scaffolds: 9
- Number of contigs: 367
- N50 of contigs: 28.4 Mbp
- L50 of contigs: 15
- Protein-coding genes: Undetermined
- Gene length (average): Undetermined
- Gene length (median): Undetermined
- CDS length (average): Undetermined
- CDS length (median): Undetermined
- CDS proportion (genome): Undetermined
- Genes without introns: Undetermined
- Number of contigs with at least one gene (genome): Undetermined
- Number of contigs with at least one gene (bases): Undetermined
Genome (BUSCO results, with eukaryota lineage dataset)
- Single-copy genes: Undetermined
- Duplicated genes: Undetermined
- Fragmented genes: Undetermined
- Missing genes: Undetermined
Proteins
- Single-copy genes: Undetermined
- Duplicated genes: Undetermined
- Fragmented genes: Undetermined
- Missing genes: Undetermined