Tabularia sp. RCC1743
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Sample collected
Sample acquired
Data generation
In assembly
Submitted
Insdc open
- Scientific name accepted: Tabularia
- Authority: (F.T. Kutzing) D.M. Williams & F.E. Round, 1986
- Phylum: Heterokontophyta
- Genus: Tabularia
- Species: Tabularia sp. RCC1743
- Ploidy: Unknown
- Common name: No common name known
- Collect event: CC-Roscoff
- Coordinator(s): Katell Hervéou
- Operator(s): Florence Le Gall
- Taxonomist(s): Priscillia Gourvil
- Date: Sept. 13, 2004
- Site (sea): Atlantic Ocean
- Site (region): Roscoff Astan
- Latitude: 48.75
- Longitude: -3.95
- ToLID prefix: uoTabSpeb
- Tabularia sp. RCC1743 archive: pending
- Genome data portal
- GoaT
- WoRMS
- NCBI
- GBIF (pending)
- OBIS
- INPN (pending)
- OpenObs (pending)
- ENA BioProject of the sequencing raw data: PRJEB101934
- ENA BioProject of the genome assembly: PRJEB101935
- Assembly accession: GCA_980915175
- EAR report with genome assembly metrics: pending
- Assembly ploidy: Not communicated
- Sequencing: Not communicated
- Size: 126.52 Mbp
- GC content: 48.0%
- Number of chromosomes: 21
- Number of scaffolds: 23
- N50 of scaffolds: 7.17 Mbp
- L50 of scaffolds: 8
- Number of contigs: 37
- N50 of contigs: 4.83 Mbp
- L50 of contigs: 10
- Protein-coding genes: Undetermined
- Gene length (average): Undetermined
- Gene length (median): Undetermined
- CDS length (average): Undetermined
- CDS length (median): Undetermined
- CDS proportion (genome): Undetermined
- Genes without introns: Undetermined
- Number of contigs with at least one gene (genome): Undetermined
- Number of contigs with at least one gene (bases): Undetermined
BUSCO structural annotations completeness
BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)
Genome
- Single-copy genes: 83.7%
- Duplicated genes: 3.1%
- Fragmented genes: 3.1%
- Missing genes: 10.1%
Proteins
- Single-copy genes: Undetermined
- Duplicated genes: Undetermined
- Fragmented genes: Undetermined
- Missing genes: Undetermined