Tables describing the different organisms and their associated data using some common descriptors and metrics.
Genome assemblies metrics
| Species |
Genome size |
GC content |
Number of chromosomes |
Number of scaffolds |
N50 of scaffolds |
L50 of scaffolds |
Number of contigs |
N50 of contigs |
L50 of contigs |
|
Anthias anthias
|
796.15 Mbp |
40.79% |
13 |
66 |
34.74 Mbp |
10 |
169 |
17.26 Mbp |
16 |
|
Apogon imberbis
|
819.13 Mbp |
39.9% |
18 |
33 |
40.31 Mbp |
7 |
38 |
40.31 Mbp |
7 |
|
Axinella polypoides
|
137.76 Mbp |
44.21% |
24 |
73 |
5.43 Mbp |
10 |
444 |
606.8 Kbp |
62 |
|
Rhyssoplax olivacea
|
1.43 Gbp |
41.64% |
12 |
114 |
109.79 Mbp |
6 |
324 |
11.62 Mbp |
36 |
|
Tubulanus polymorphus
|
267.93 Mbp |
37.69% |
12 |
81 |
24.87 Mbp |
5 |
149 |
9.53 Mbp |
11 |
|
Venus verrucosa
|
2.09 Gbp |
35.24% |
19 |
177 |
108.5 Mbp |
9 |
446 |
15.53 Mbp |
42 |
Structural annotations metrics
| Species |
Protein-coding genes |
Exons per gene (mean | median) |
CDS length (mean | median) |
CDS percentage |
Monoexonic genes |
Contigs with at least one gene (percentage of genome | percentage of bases) |
lncRNAs |
Structural annotations metrics (BUSCO results, with eukaryota lineage dataset)
| Species |
Single copy genes (genome) |
Duplicated genes (genome) |
Fragmented genes (genome) |
Missing genes (genomes) |
Single copy genes (proteome) |
Duplicated genes (proteome) |
Fragmented genes (proteome) |
Missing genes (proteome) |
|
Axinella polypoides
|
90.6% |
1.2% |
3.9% |
4.3% |
Undetermined |
Undetermined |
Undetermined |
Undetermined |
|
Rhyssoplax olivacea
|
98.4% |
0.0% |
0.0% |
1.6% |
Undetermined |
Undetermined |
Undetermined |
Undetermined |
|
Tubulanus polymorphus
|
97.6% |
0.4% |
1.6% |
0.4% |
Undetermined |
Undetermined |
Undetermined |
Undetermined |
